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        <title>hpc documentation - software:gromacs</title>
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            <title>caviness</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/caviness</link>
            <description>Gromacs on Caviness

Templates for Slurm job submission scripts are available for batch GROMACS jobs in /opt/shared/templates/slurm/applications/gromacs.  Copy and edit the template based on your job by following the usage described in gromacs.qs.
/opt/shared/templates/slurm/applications</description>
            <author>anonymous@undisclosed.example.com (Anonymous)</author>
            <pubDate>Tue, 17 Mar 2026 14:40:12 +0000</pubDate>
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        <item>
            <title>darwin</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/darwin</link>
            <description>Gromacs on DARWIN

Templates for Slurm job submission scripts are available for batch GROMACS jobs in /opt/shared/templates/slurm/applications.  Copy and edit the template based on your job by following the usage described in gromacs.qs.
/opt/shared/templates/slurm/applications</description>
            <author>anonymous@undisclosed.example.com (Anonymous)</author>
            <pubDate>Thu, 07 Sep 2023 15:17:55 +0000</pubDate>
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        <item>
            <title>farber</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/farber</link>
            <description>Gromacs on Farber

Templates for Grid Engine queue submission scripts are available for batch GROMACS jobs in /opt/shared/templates/gridengine/gromacs.  Copy and edit the template based on your job by following the usage described in gromacs.qs.
/opt/shared/templates/gridengine/gromacs</description>
            <author>anonymous@undisclosed.example.com (Anonymous)</author>
            <pubDate>Tue, 27 Apr 2021 20:21:09 +0000</pubDate>
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        <item>
            <title>gromacs</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/gromacs</link>
            <description>GROMACS

GROMACS (GROningen MAchine for Chemical Simulations) is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

To determine the available versions of GROMACS installed use</description>
            <author>anonymous@undisclosed.example.com (Anonymous)</author>
            <pubDate>Wed, 29 Mar 2023 18:04:47 +0000</pubDate>
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            <title>mills</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/mills</link>
            <description>Gromacs on Mills

Templates for Grid Engine queue submission scripts are available for batch GROMACS jobs in /opt/shared/templates/gridengine/gromacs.  Copy and edit the template based on your job by following the usage described in gromacs.qs.
/opt/shared/templates/gridengine/gromacs</description>
            <author>anonymous@undisclosed.example.com (Anonymous)</author>
            <pubDate>Tue, 27 Apr 2021 20:21:09 +0000</pubDate>
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            <title>sidebar</title>
            <link>https://docs-archive.hpc.udel.edu/software/gromacs/sidebar</link>
            <description>*  Home
	*  Caviness
	*  DARWIN
	*  Farber (Retired)
	*  Mills (Retired)
	*  Software
				*  Abaqus
				*  Anaconda
				*  Ansys-Fluent
				*  Apptainer
				*  ArcGIS
				*  Comsol
				*  FFTW
				*  Gaussian
				*  Globus
				*  Gromacs
					*  Caviness
					*  DARWIN
					*  Farber
					*  Mills

				*  Gurobi
				*  HPCC
				*  Java
				*  Jupyter Notebook
				*  LAMMPS
				*  LAPACK
				*  LaPlace
				*  Lumerical
				*  Mathematica
				*  Matlab
				*  Matplotlib
				*  Miniconda
				*</description>
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            <pubDate>Mon, 06 Apr 2026 20:01:35 +0000</pubDate>
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